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Abbreviations
cryo-EM electron cryomicroscopy
EM
electron microscopy
gp
gene product
OB fold
oligonucleotide/oligosaccharide-binding fold
phage
bacteriophage
T4L
phage T4 lysozyme
Introduction
Assembly
Bacterial viruses, or bacteriophages, have developed various strategies through which to infect a susceptible
bacterial host. Unlike many other viruses (especially
those that infect eukaryotic organisms), most of which
enter the host by endocytosis, bacteriophages remain
attached to the outer cell surface during infection. A vast
majority of phages have evolved to use a special organelle,
called a tail, for host recognition, attachment and genome delivery into the cell [1]. The tail is attached to the
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Figure 1
(a)
(b)
DNA
Head
Tail tube
Long
tail
fiber
500
Tail
sheath
Long
tail
fiber
Baseplate
Current Opinion in Structural Biology
Characteristics of the Myoviridae viral family. (a) Cryo-EM micrograph of phage T4. (b) Schematic of the major structural components of a
Myoviridae phage. The black triangle in the center of the baseplate represents the cell-puncturing device. The short tail fibers are shown as bent
arrow-like objects around the periphery of the baseplate.
Table 1
Tail proteins listed in order of assembly into the complete tail [9,10].
Protein
Oligomeric state
gp11
gp10
gp7
gp8
gp6
gp53
gp25
gp5
gp27
gp29
gp9
gp12
gp48
gp54
gp19
gp3
gp18
gp15
gp26
Gp28
23.7
66.2
119.2
38.0
74.4
23.0
15.1
63.7
44.4
64.4
31.0
55.3
39.7
35.0
18.5
19.7
71.2
31.4
23.9
17.3
Trimer
Trimer
Monomer
Dimer
ND
ND
ND
Trimer
Trimer
ND
Trimer
Trimer
ND
ND
Polymer
Hexamer
Polymer
Hexamer
ND
ND
18
18
18
12
12
6
6
3
3
3
18
18
6
6
138a
6
138a
6
b
b
PG Leiman, unpublished data. Earlier estimate was 144 copies [9]. bCopy number is uncertain. LTF, long tail fiber; ND, not determined;
STF, short tail fiber.
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Structure of the bacteriophage T4 baseplate, as determined by cryo-EM and image reconstruction at 12 A resolution [3], and atomic structures of six
baseplate proteins [4,5,6,7,8,50]. (a) Side view of the tubebaseplate complex. Only about one-third of the tail tube, most proximal to the
baseplate, is shown for clarity. Component proteins are depicted in different colors and identified by their respective gene numbers. A color-coded
bar with corresponding gene product numbers is provided on the right, in (b). (b) Cut-away view of the baseplate, revealing the internal structure
of the dome, including the central cell-puncturing complex. (c) Structure of the gp8 dimer, shown in two orthogonal orientations [7]. (d) Structure
of the gp9 trimer, shown with its threefold axis in the plane of the paper [4]. (e) Structure of the gp11 trimer, shown in two orthogonal orientations [6].
(f) Structure of the gp5gp27 trimeric complex, shown with its threefold axis in the plane of the paper [5]. (g) Structure of the trimeric gp12
C-terminal fragment (residues 250527), shown with its threefold axis in the plane of the paper [8,50]. In (cg), each polypeptide chain is identified
by its own color.
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Early electron microscopy (EM) and biochemical studies of the baseplate have led to a low-resolution structure of the baseplate, with approximate positions of the
component proteins [26]. The baseplate was recognized
as being a planar structure with six pins (shown to be
composed of gp7, gp10 and gp11 [27]) at the baseplate
vertices. Short tail fibers, being longer than the distance
between the pins, were proposed to either run around
the circumference of the baseplate or fold back onto
themselves [28,29]. This structure is mostly consistent
Current Opinion in Structural Biology 2004, 14:171180
Figure 3
Stabilization of the hexagonal conformation of the baseplate by the short tail fibers and gp9, the long tail fiber attachment protein [3]. (a) Gp9 is
fitted into the cryo-EM density, suggesting a variable orientation of gp9. The dominant (green line) and the most extreme tilt positions (red and
blue lines) of gp9 are shown as lines, parallel to its threefold axis. (b) The baseplate density and gp9, shown as a Ca trace, placed in its dominant
position. The cryo-EM density, corresponding to gp9, has been removed for clarity. The lines are colored as in (a) and indicate the limit of the long
tail fiber oscillations. (c) The six short tail fibers make a head-to-tail garland. Gp11 is shown as a Ca trace.
Figure 4
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Genomes of several Myoviridae phages have been sequenced recently [4245]. These include the T-even
group, composed of phages with virion morphology similar to T4 [44]. This group consists of three subgroups,
which diverge progressively further from T4 in the following order: T-even (e.g. phages T2 and RB69), pseudo
T-even (e.g. phages RB49 and 44RR2.8t), schizo T-even
(e.g. phages Aeh1 and KVP40) [44]. These phages grow in
diverse environments and propagate on distantly related
Gram-negative bacteria, such as E. coli and other entero-
(Figure 4 Legend) Alignment of gp5 from six phages belonging to the T4-group, obtained using the program CLUSTAL W [51,52]. The sequences
are identified with the corresponding phage name and listed in order of divergence from T4 gp5. The amino acid sequence number for the last
residue on each line is shown. The sequence of T4 gp5 is colored according to its domain organization: the N-terminal domain is in magenta, the
lysozyme domain is green, the C-terminal domain is blue, and the two long linker regions are in red and light blue. Note the absence of the lysozyme
domain in KVP40 gp5. Similarity of residues is indicated by symbols: * identity, : well-conserved substitution and . moderately conserved
substitution [52]. Secondary structure elements, indicated above the sequences, are derived from the known atomic structure of T4 gp5: b-strands
are indicated with black arrows; a-helices with white rectangles. Gp5 from T4 has the shortest b-helix of the six analyzed phages and the b-helices
might have up to four extra b-strands (dashed arrows). Residues forming the turns of the intertwined region of the b-helix are depicted in bold.
The maturational cleavage of T4 gp5 and the start of the b-helix are indicated above the sequences. The residues that form the active site of the
lysozyme domain are highlighted as yellow boxes. GenBank accession numbers for gene 5: T4 NP_049757, RB69 AAP76063, RB49 AAL12619,
Aeh1 AAQ17861, 44RR2.8t AAQ81457, KVP40 AAQ64404.
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Figure 5
Stereo diagram of the gp5 C-terminal domain [5]. The three chains are colored red, green and blue. The residue numbers are indicated in
strategic locations. The metal and phosphate ions, stabilizing the internal contacts in the b-helix, are shown as yellow and magenta spheres,
respectively.
with the cell surface and the short tail fibers interact with
their host cell receptors, presumably unlocking the garland, which holds the baseplate pins and secures the
hexagonal conformation of the baseplate. The baseplate
switches from the hexagonal to the star conformation and
initiates contraction of the tail sheath, which then drives
the rigid tail tube through the outer cell membrane using
the pointed needle that is formed by the gp5 C-terminal
b-helix, situated at the tip of the tube extension (formed
by the baseplate hub). The b-helix dissociates when it
comes into contact with the periplasmic peptidoglycan
layer, thus activating the three lysozyme domains of gp5.
These digest the peptidoglycan layer and create an opening through which the tail tube can reach the cytoplasmic
membrane of the host cell. The contact of the tail tube
with the cytoplasmic membrane initiates release of the
phage DNA into the host through the tail tube.
Conclusions
Studies of the bacteriophage T4 baseplate have shown
that assembly of large macromolecular complexes can
be regulated by sequential interactions of the component proteins but not by the order of gene expression.
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Acknowledgements
were small and were proposed to be caused by the crystal lattice forces.
Phasing, with the help of the ordered Br ions, was unsuccessful, probably
as a result of the low redundancy and low resolution of the data.
8.
3.
5.
7.
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