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- ChemBioViz Pro 11.0: Tng quan gia cc s liu v hot ng ha hc v sinh hc, to cc biu tng tng trng ha ca cc c s d liu ChemFinder nhm xc nh chiu hng v s tng quan gia cc s liu, tnh ton s liu thng k chi tit v biu din ln th. - ChemDraw/Excel Pro 11.0: Cung cp cc bng s liu ha hc vi cc cu trc v tm kim cc cu trc ha hc trong ti liu, th mc hay a. - ChemDraw ActiveX/Plugin Pro 11.0: Truy vn c s d liu trc tuyn, xem v in cc m hnh trc tuyn. B ci t ny t ng ci cc plugin v cc iu khin ActiveX cn thit cho trnh duyt web. Bao gm c chc nng in n v lu tr. - ChemNMR Pro 11.0: D on cc quang ph NMR ca proton carbon-13 t cc m hnh ChemDraw. dch chuyn ha hc v c ch phn li c hin th r rng v lin kt trc tip n cc m hnh i vi c proton v cc d on quang ph NMR ca carbon-13. - Struct=Name Pro 11.0: Cung cp tn nhiu loi hp cht, bao gm cc ht mui v cc hp cht dn in, cc m hnh i xng hon ho, nhiu loi hp cht hu c v v c cng nhiu th khc. - ChemScript Pro 11.0: M rng ngn ng lp trnh Python v nhiu thut ton ha hc thng minh ca CambridgeSoft bao gm trong cc sn phm, ng thi em li cho ngi dng di dng mt on m m hnh mu d chn vo ngn ng lp trnh. ChemScript cho php m rng cc qui c ha hc ring v p dng cc qui c ny trn hng lot d liu. - Gamess Pro 11.0: GAMESS l ng dng cho ha hc lng t phn t c bn. GAMESS c kh nng tnh ton cc hm s sng SCF t cc hm RHF, ROHF, UHF, GVB, v MCSCF. Sa i mi tng quan gia cc hm s sng SCF bao gm tng tc iu chnh, thuyt hn mang bc hai, v cc phng thc b cp (Coupled-Cluster), cng nh thuyt tnh xp x hm phn b. - Databases:C s d liu ha hc khoa hc tham kho c chc nng tm kim, bao gm 1 nm ng k vi cc c s d liu Ashgate v ChemINDEX. Yu cu h thng : Windows Windows 2000, XP, Vista (32-bit); Excel add-ins cn c MS Excel 2000, 2003, cho XP Trong bi vit ny ti hng dn cc Thy c gio cch s dng phn mm ChemOffice da trn 2 phien bn 2004 v 2008. Phin bn mi (ChemOffice 2008) ra i sau nn chc chn c nhiu ci tin v chc nng hn phin bn c (ChemOffice 2004). Tuy nhin yu cu cu hnh my vi tnh cng cao hn. Ty vo nhu cu s dng v cu hnh ca my vi tnh m Thy c chn phin bn ph hp. Theo kinh nghim ca bn thn, vi yu cu phc v cho vic son ging ln lp th ch cn phin bn ChemOffice 2004 l .
HNG DN CI T PHN MM CHEMOFFICE A. CI T PHN MM CHEMOFFICE 2004 M file Chemoffice 2004 v nhp p chut tri vo COU80; Nhp chn Next/Next
Chn mc I accept the tem in the license agreement ; sau chn Next Quay li m th mc HUONG DAN trong th mc Chemoffice 2004, copy dy s 7654321 ca Serial-1 em paste vo : Serial Number: v copy dy ch VLPGCG5O-5K22-VKVK-RF ca Serial-2 em paste vo : Registration code: (Paste bng t hp phm Ctrl + V hoc c th nhp trc tip 2 dy Serial ny bng bn phm) Sau nhp chn Next.
B. CI T PHN MM CHEMOFFICE 2008 M file Chemoffice 2004 v nhp p chut tri vo COU101. Xut hin bng sau:
Nhp cc thng tin sau vo cc tng ng Name: lZ0 Email: lz0@lz0.COM Serial: 011-256104-7199 v sau nhp chn th Activate Later; Chn OK bc tip theo
bng ny cho ta chn cc ng dng cn ci vo my. Tuy nhin vi nhu cu hin tai ta ch nn chn ChemOffice Ultra 2008 (nh du chn). Chn Next; Sau Chn Begin, Next cc bc tip theo.
Chn I accept the terms of the license agreement. Chn Next; Chn Custom v chn Next
Quay li th mc CHEMOFFICE 2008. M th mc crack, nhp p chut tri vo file crack. Chn Yes v OK bc tip theo.
Thanh cng c
Thanh trt dc
Vng so n th o
Ti liu tp hun s dng CNTT trong ging dy mn Ha Hc - 2010 trang 8 b. Cc cng c chnh ca chng trnh
Lasso Structure perspective Solit Bond Multiple Bonds Dashed Bond Hashed Bond Hashed Wedget Bond Bold Bond Bold Wedget Bond Hollow Wedget Bond Wavy Bond Table Acyclic chain Cyclopropane Ring Cyclopentane Ring Cycloheptane Ring Cyclohexane chair 1 Cyclopentadiene Ring
Marquee Mass Framentation tool Eraser Text Pent Arrows Orbitals Drawing elements Brakets Chemical symbols Query tools TLC plate Templates Cyclobutane Ring Cyclohexane Ring Cyclooctane Ring Cyclohexane chair 2 Benzene Ring
Lasso: Chn i tng bng cch ko x ung quanh chng. + Marquee: Chn i tng bng cch ko cho qua chng. + Structure perspective : Xoay i tng c chn. + Mass Framentation tool : Tch phn t qua nhng lin kt c bit. + Solit Bond: V v sp t cc loi lin kt. + Eraser: Xo i tng. Kch hot vo i tng cn xo hoc ko xo nhiu i tng. + Multiple bonds : Hp cng c ny c cc cng c dng v v sp xp cc loi lin kt. + Text: Vit cc k hiu nguyn t v ch thch. + Dashed Bond : Lin kt dng nt t. + Pent: V mi tn v orbital tu theo la chn. + Hashed Bond : V lin kt dng lp th. + Arrows: Hp cng c ny c cc cng c dng v mi tn, hnh mi tn. + Hashed Wedget Bond: V lin kt lp th. + Orbitals: Hp cng c ny cha ng cc cng c dng v cc loi orbital. + Bold Bond: V lin kt n nt m.
+ Drawing elements : V nhng ch thch c ngha ho hc nh nhng hp, dng k. + Bold Wedget Bond: V lin kt lp th. + Brakets: Hp cng c ny cha ng cc cng c dng v cc du ngoc. + Hollow Wedget Bond : V lin kt lp th. + Chemical symbols : Hp cng c ny cha ng cc cng c dng v cc biu tng c ngha ho hc n h in tch, gc t do, cp electron cha chia, + Wavy Bond: V cc lin kt dng ng cong. + Arc: Hp cng c ny cha ng cc cng c dng v cc cung, gc. + Acyclic chain : V cc mch vi di khc nhau. + Templates: Hp cng c ny cha ng cc cng c dng v nhng cu trc, cc hnh c sn. + Cyclopropane Ring : V cu trc vng 3 cnh. + Cyclobutane Ring : V cu trc vng 4 cnh. + Cyclopentane Ring : V cu trc vng 5 cnh. + Cyclohexane Ring: V cu trc vng 6 cnh. + Cycloheptane Ring: V cu trc vng 7 cnh. + Cyclooctane Ring : v cu trc vng 8 cnh. + Cyclohexane chair 1 v 2: V 2 cu dng gh ca vng 6 cnh. + Cyclopentadiene Ring : V cu trc vng 5 cnh c 2 ni i lin hp. + Benzene Ring: V cu trc vng benzen. + Table: V cc bng vi s dng v s ct ty chn. + TLC plate: V sc k cc cht, hay ni cch khc l s v tc di chuyn ca cc cht khc trong dung mi. 2. Cch s dng Cc cng c ca Chemdraw c s dng trong nhiu cng vic khc nhau nh: v cc phng trnh phn ng; v cng thc ca cc cht phc tp nh: phc cht, polime, cc hp cht hu c hay v cc s ca cc b dng c th nghim Di y l cch s dng cng c ca Chemdraw v mt s hnh thng gp trong ha hc. 2.1. Mt s thao tc c bn thng gp khi s dng phn mm. - Chn mt i tng: Chn i tng bng cng c Lasso (chn t ng) hoc cng c Marquee chn mt phn i tng. Cch chn: Nhp chut tri vo cng c hoc . Gi chut tri v ko con tr cho qua i tng. - Xa mt i tng: xa mt i tng ta nhp chut tri vo biu tng (con tr chut c hnh vung). a tr chut n im gia i tng cn xa (xut hin hnh ch nht sm mu) v nhp chut tri hoc nhn phm Enter. - Quay li thao tc trc: Nu thao tc sai ta c th dng lnh Undo quay li thao tc trc tng t nh trong MS Word. - Sao chp mt i tng: Sau khi chn i tng cn copy. a con tr chut (c hnh bn tay) vo trong khu vc hnh chn v nhn chut phi v chn lnh Copy. Sau em Paste ra v tr cn thit trong vng son tho hoc trang MS Word, MS Power Point. - Di chuy n t ng: di chuyn i tng ta chn i tng sau gi i chut tri ko i tng sang v tr cn thit.
- T mu m t i t ng: Trc tin ta chn i tng cn t mu, sau nhp chut tri vo th Color trn thanh Menu v chn mu. - Phng to thu nh v quay mt i tng: + i vi Chemoffice 2004: Sau khi chn i tng cn phng to hoc quay, ta r con tr chut vo gc ca khung vin i tng ni c mu sm thy xut hin du mi tn thng 2 chiu (dng phng to) hoc mi tn cong 2 chiu v tr ng thng hng ra ngoi ca trn khung vin (dng quay), gi chut tri v ko theo hng mi tn n khi t yu cu. + i vi Chemoffice 2008: Sau khi chn i tng cn phng to hoc quay, ta r con tr chut vo gc hoc gia cnh ca khung vin i tng thy xut hin du mi tn thng 2 chiu (dng phng to) hoc mi tn cong 2 chiu v tr ng thng hng ra ngoi ca trn khung vin (dng quay), gi chut tri v ko theo hng mi tn n khi t yu cu. - Lu mt i tng: Vo menu File, chn Save as, mt ca s mi xut hin. * Save in, chn ni lu ca tp tin. * File name, t tn cho tp tin cn lu. * Save as type chn nh dng ca tp tin cn lu,thng thng ngi ta la chn nh dng GIF (tp tin hnh nh).
* Nhn phm Save, hoc g phm Enter lu tp tin li. - M mt i tng c lu trong a: M ca s lm vic ca Chemdraw hoc Chem 3D, chn File/Open (hoc kch vo biu tng ). Trong ca s mi, nhp vo hnh tam gic trong Look in dn n ni lu i tng, chn ng tn i tng cn thit. Sau nhn Open hay Enter.
2.2. Gii thiu mt s ng dng c bn ca phn mm. a.V cng thc phn t, cng thc cu to v s phn ng ha hc Trong phn ny thng s dng mt s cng c chnh sau ca chng trnh. Cc cng c v lin kt ha hc: (lin kt n hay solid bond), (lin kt i), (mi tn), (Text) v mt s cng c khc v. ChemDraw Ultra cho php khi g tn theo IUPAC (hoc mt s tn thng thng) ca mt cht, chng trnh s x l v chuyn ngay thnh cng thc cu to phng. Cng thc cu to phng vit trong ChemDraw Ultra c th chuyn thnh cng thc cu to lp th trong CS Chem 3D vi nhiu tnh nng hn so vi ISI/Draw, ACD 3D Viewer v ChemWindows. V d: Vit cng thc cu to ca Methane (CH4) B1. Chn menu Edit/ Insert Name as Structure B2. Xut hin ca s Insert Structure , g vo khung hp thoi tn IUPAC hoc tn thng ca ha cht. Trong trng hp ny, nu bn g metan th chng trnh khng hiu m nn dng methane. B3. Chng trnh s hin th cng thc cu to phng ca hp cht. Bn cng c th chuyn thnh m hnh phn t 3D trong Chem 3D (xem hng dn phn sau). - V Cng thc phn t B1. Dng chut tri nhp vo biu tng v nhp chut tri vo vng son tho nhp ch. B2. Nhp cng thc phn t vo. Dng chut tri nhp vo biu tng vit cc ch s ca nguyn t. V d: V CTPT ca axit axetic, ancol etylic
- V cng thc cu to (ta s dng cc cng c v khung phn t gm cc lin kt, sau s b sung phn ch vo khung) + V cc lin kt B1. Nhp chut tri vo cng c Solid bond (con tr chut c hnh du cng) v nhp vo vng son tho v lin kt n. B2. thm mt lin kt th hai, bn tip tc s dng cng c Solid bond v r con tr chut n mt trong hai u ca ca lin kt c to trc khi xut hin hnh vung sm mu th nhp chut tri v gi chut tri r theo hng cn v. (nu nhp chut tri th lin kt th hai c hnh thnh v hp vi lin kt th nht mt gc 1200). i vi lin kt i, ba ta dng cng c tng ng v thao tc tng t. + Thm ch vo khung lin kt B1. Nhp chut tri vo biu tng (con tr chut c hnh du cng c ch A gia). a tr chut vo u mi lin kt (khi xut hin hnh vung sm mu) v nhp chut tri. Ta nhp ch cn thit vo khung.
- Dng cng thc cu to sn c trong phn mm V d: V CTCT ca benzen, phenol B1. Nhp chn i tng hoc theo ng dn Template\Ph Rings v nhp chn vng benzen v vo vng son tho. B2. Copy hoc v thm 1 vng benzen na. B3. Dng cng c v lin kt v dn ch v CTCT ca phenol.
- V phng trnh phn ng ha hc B1. V CTCT ca cc cht trong phng trnh phn ng. B2. Sp xp cc cht theo ng th t v b sung du cng (bng cng c v bn phm) v du mi tn trong cng c V d. V phng trnh phn ng gia etilen vi brom.
b.V cng thc chiu Fisher ca cc cht hu c : v cng thc chiu Fisher ca mt c ht c th lm nh sau (v d i vi cng thc 2,3-dihidroxibutanal): *Dng cng c Solid bond v mch chnh ca cht cn v theo phng ng. Ty thuc vo vic c bao nhiu nguyn t C bt i m chn v s lin kt cho thch hp. Vi v d ang xt th v 3 lin kt n thng ng ni li vi nhau, to thnh hai im ni ng vi 2 nguyn t C bt i. *Ti cc im ni vn dng cng c Solid bond, kch chut vo cc im ny, ko chut sang tri v sang phi theo cc phng nm ngang to cc lin kt nm ngang trong cng thc chiu. *Dng cng c Text in cc nguyn t hay nhm nguyn t cn thit trn cng thc chiu.
c. V s cc dng c th nghim:
v s cc dng c th nghim ta nhp chut tri cng c vo cng c (Chemoffice 2008) hay cng c (Chemoffice 2004) v ty vo yu cu m ta c th chn dng c cn thit trong th Clipware.part 1 hoc Clipware.part 2.
*Gi chut tri v r chut tm chn cc dng c th nghim cn thit, sau th chut v v vo khung son tho. *Bn chn cc dng c trn ca s ca chng trnh, sau bn vo cng c Lasso chn tng dng c, v dng cc phm dch chuyn qua li, ln xung lp t cc dng c ca b th nghim li thnh h thng nh mun. V d: V s chun NaOH bng HCl + Chun b cc dng c cn thit. + S dng mt s thao tc nu ta v c s th nghim.
d. Mt s vn khc: Ngoi mt s ng dng ca phn mm Chemdraw Ultra trong cc vn nu th phn mm ny cn c s dng gii quyt nhiu vn na trong ha hc nh: v m hnh obitan nguyn t cng nh phn t, v cu to ca cc polime, v cu trc lp th ca cc cht, v cc s sc k, II.Cch s dung phn mm Chem3D Ultra 1. Ca s chng trnh: i vi ChemOffice 2004 : Start \Programs \ ChemOffice 2004 \ Chem3D Ultra 8.0 i vi ChemOffice 2008 : Start \ Programs \ ChemBioOffice 2008 \ ChemBio3D Ultra 11.0 Nu xut hin hp thoi Chem 3D to chem 3D 8.0! la chn chc nng Enable
hardware acceleration, and make this default settings ri nhp chut tri chn vo I have read. Please dont show me this again khng hin th thng bo trong cc khi ng tip theo, sau click OK bt u.
*Cng c chnh ca Chem 3D tng t vi Chemdraw. 2. Cch s dng: Chem 3D Ultra c s dng ch yu vo vic thit k m hnh phn t ca cc hp cht ha hc. ng thi n cn cho php ta thit k s quay ca cc m hnh phn t ny trong khng gian. a. Cch to mt m hnh phn t: V d: v cu trc phn t axit sunfuric ta thc hin nh sau: Kch chut vo cng c (Text) v kch vo vng trnh by. Nhp cng thc phn t H2SO4 vo v nhn phm Enter, m hnh phn t tng ng vi cng thc nhp s c hin th. Hoc c th s dng cc cng c v lin kt v cu trc phn t.
* bin tp li m hnh phn t c th kch chut vo cc biu tng sau: cho php xoay m hnh phn t. hoc : trn m hnh phn t hin k hiu ca tng loi nguyn t. hoc : hin th s trn m hnh phn t. hoc : thay i mu nn cho m hnh phn t. nhn m hnh trong khng gian 3 chiu. hoc chn kiu m hnh phn t: - Wire fram: dng si. - Sticks:dng que. - Balls and sticks: dng que v hnh cu. - Cylindrical bonds : dng cc lin kt kiu hnh tr. - Space filling: dng khi. * thay i nguyn t trn m hnh phn t thit k, ta kch chut vo cng c Text, sau kch chut nguyn t mun i tn trn m hnh phn t, nh tn nguyn t cn thay i thay i vo trong Text ny, nhn phm Enter chng trnh s t ng i tn nguyn t. V d chuyn m hnh phn t H2SO4 thnh Na2SO4: ta dng cng c Text thay th nguyn t H bng Na. + + + + + +
b.
Sau khi to c mt cu trc 3D, ta mun cho cu trc ny quay trong khng gian a vo MS Power Point, ta tin hnh nh sau: - To cu trc quay trong khng gian + Vi Chemoffice 2004. B1. Nhp chn th Analyze, trong hp thoi x xung ta chn chiu quay tng ng theo th Spin About X Axis (quay theo trc X), Spin About Y Axis (quay theo trc Y), Spin About Z Axis (quay theo trc Z). B2. Chn tc quay bng cch nhp chut tri th View chn Settings. Trong hp thoi Chem 3D Settings chn th Movie v ko thanh trt chn tc quay ph hp v nhp chn OK. - Vi Chemoffice 2008. B1. Nhp chut tri vo mt trong cc cng c v quan st s quay ca cu trc. B2. Chn tc quay bng cch nhp chut tri vo v ko thanh trt chn tc quay ph hp. - Lu s quay ny thnh phim. Trc tin ta phi nhp chut tri vo biu tng dng vic quay. Sau Chn File\Save as lu li. Trong hp thoi Save as ta chn nh dng file cn lu l Windows AVI Movie (*.avi) trong Save as type. Nhn Save hon tt qu trnh. b. S dng cc m hnh m phn mm thit k sn i vi ChemOffice 2004 : View \ Substructure.TBL i vi ChemOffice 2008 : View \ Parameter Tables \ Substructures
Cc cu trc c thit k sn trong phn mm Chemoffice 2004 Mt ca s mi xut hin.Trong ca s ny c khong 256 m hnh phn t ca cc
cht khc nhau. Vi Chemoffice 2008: Mun ly cu trc no th nhp chut phi thc hin lnh Copy v Paste vo vng son tho. Vi Chemoffice 2004: Ta thc hin nh sau: B1. t con tr chut vo hnh tam gic trc tn hp cht cn ly ra v kch chut tri chn. Khi m hnh phn t hin ra kch chut vo m hnh chn. B2. Vo menu Edit, chn Copy. B3. Tr li ca s chnh ca chng trnh, vo menu Edit, chn Paste.
Cch ly cc cu trc c thit k sn Chemoffice 2004 Cn c nhiu vn cha ng trong phn mm ny m ti cha th nu ht ra c ang ch cc bn khm ph tip. Ngoi ra cng cn rt nhiu phn mm khc na cha c vit phc v cho vic dy v hc mn ha hc. Do vy nhng ng gp ca qu thy c gio cng nh bn c s cho ti nhng kinh nghim quan trng trong vic s dng v ng dng ca cc phn mm nhm phc v tt hn cho vic ging dy mn ha hc. Xin chn thnh cm n.