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    Gopal Krishan
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    Slurm for HPC

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    Slurm for HPC

    Copyright:

    © All Rights Reserved
    Download as PDF, TXT or read online from Scribd
    Flag for inappropriate content
    115 views1 page

    01 Slurm14.3TrainingHands On

    Uploaded by

    Gopal Krishan
    Slurm for HPC

    Copyright:

    © All Rights Reserved
    Download as PDF, TXT or read online from Scribd
    Flag for inappropriate content
    of 1

    NewZealandeScienceInfrastructure

    SlurmUserTraining14

    SlurmWorkloadManagerHandsOn
    In this handson, we are going to setup different submit scripts attending to the usage (serial, OpenMP, MPI,
    job arrays, job dependency). We would like to encourage you to spend this time in porting your Loadleveler
    scriptstoSlurm.
    Estimatedtime:30minutes

    ToDo Requirements
    LogintobuildwmafterlogintothePan Clusteraccount.
    cluster. LaptopwithSSHclient.
    ssh build-wm
    Copythecontentof/share/training/slurm QuickReference
    toyourprojectdirectory. Slurmcommands
    Edittheserial.sl sacctExtractaccountinginformationfromcluster.
    changetheJobname scancelJobdeletion.
    askfor2GBofmemory sinfoShowsstatusinformationaboutcluster.
    changetheworkingdirectory squeueStatuslistingofjobsandqueues.
    askfor2hwalltime sviewGUItoviewjob,nodeandpartitioninformation.
    addyourprojectaccount smapCLItoviewjob,nodeandpartitioninformation.
    submitthejob sbatchCommandlineinterfacetosubmitjobs.
    reviewthequeuestatus interactiveAllocatesHPCresourcesforinteractive
    Edittheopenmp.sl usage.
    askfor12cores CommonlyusedSLURMvariables
    addemailnotification $SLURM_JOBID
    addyouremailaddress $SLURM_JOB_NODELIST:i.e.sb[004,006]
    submitthejob $SLURM_NNODES:Numberofnodes
    reviewthequeuestatus $TMP_DIR:localfilesystem
    Editthempi.sl $SCRATCH_DIR:sharedfilesystem
    askfor24cores $SHM_DIR:localRAMfilesystem
    askfor3dayswalltime $SLURM_SUBMIT_DIR
    submitthejob CommonlyusedSLURMoptions
    reviewthequeuestatus #SBATCH -J FLEXPART-WRF
    changethewalltimeto10min #SBATCH -A uoa99999 # Project Account
    #SBATCH --time=00:10:00 # Walltime
    submitthejob
    #SBATCH --mem-per-cpu=1024 # memory/cpu (in MB)
    reviewthequeuestatus #SBATCH -D /project/uoaXXXX # Working Directory
    Editthearray.sl #SBATCH -o job-%j.%N.out # OPTIONAL
    #SBATCH -e job-%j.%N.err # OPTIONAL
    askfor100jobarray
    #SBATCH --mail-type=ALL # email notification
    askfor2cores #SBATCH --mail-user=username@nesi.org.nz
    askfor10minutewalltime #SBATCH -C sb # sb=Sandybridge wm=Westmere
    submitthejob #SBATCH --cpus-per-task=8 # 8 OpenMP Threads
    #SBATCH --ntasks=96 # Number of MPI tasks
    reviewthequeuestatus #SBATCH --nodes=2-4 # Number of nodes
    cancellast80jobsinthearray #SBATCH --array=1-500 # Array definition
    Submitthepreprocessing.sl #SBATCH --dependency afterok:JOB_ID

    Submitthempi.slwithpreviousjob

    dependency
    sbatch --dependency afterok:JOB_ID mpi.sl Reference
    Submitthepostprocessing.slwith SlurmTrainingSlides
    previousjobdependency SlurmSubmitScriptTemplates
    Executetheinteractivecommandline: CeRwikipage
    interactive -A PROJECT_ACCOUNT SlurmRosettaStone
    TranslatefromLoadlevelertoSlurm
    SlurmCheatSheet

    June2014NeSI(NewZealandeScienceInfrastructure)
    email:support@nesi.org.nzweb:www.nesi.org.nz

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