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Amino acids structures & properties. Peptides. Proteins primary, secondary, tertiary & quaternary structures. protein folding
Examples:
Structural functions proteins acting as scaffold of a cell. Enzymes e.g., amylase/digestive enzymes. Transcription factors (participate in reading genetic information & making RNA) Translation factors (participate in making proteins using genetic information) Hormones e.g., insulin.
Antibodies- e.g., IgG, IgM
Antibodies
Mutation in Myostatin protein result in Heavy muscling. Loss of muscle proteins results in muscle wasting
R
H2N CH
O C OH
R1
O H2N CH C HN
R2
O CH C HN
R3
O CH C
Thus, amino acids have stereoisomers In cells, the L-amino acids exist.
H2N
CH
OH
Aliphatic
Aromatic
Acidic Basic
Uncharged
neurotransmitter
metabolism
Serotonin
Glycine
Alanine
Phenylalanine
Illustration - rasmol
Amphoteric molecules At least 2 pKas, and 3 if R group has dissociable protons (e.g., aspartate, lysine)
Titration of Glycine
pK2 9.6
pI = pKa/2 ; pKa of groups that will lose/gain charge of the neutral species.
pK3 9.7
Titration of Lysine
Note that isoelectric point is more basic than glutamate
pK3 10.8
Collagen
Formed as a result of post-translational modifications. Specific for only some proteins. Perform important functions in proteins.
Hydroxyproline
Hydroxylated form of proline Found in collagen Provides stability to collagen fibres Insufficient hydroxylation leads to scurvy- due to lack of vitamin C
Phosphoserine/Phosphothreonine/Phosphotyrosine The most common modified amino acids Phosphate groups add negative charges to protein
Present in abundance in casein (milk protein) and hence binds calcium (phosphoserine). Involves in cell signaling and control of enzyme activity. Reversible phosphorylation. Some growth factor receptors switch-on-off by phosphorylation.
OH CH2 H2N CH OH
O
O CH2 OH H2N CH O
PO3O
Phosphoserine
OH
C PO3-
CH2 H2N CH
Phosphotyrosine
O
CH2 OH H2N CH
OH
Cells convey signals from external to internal by exploiting reversible changes in some amino acids e.g., phosphorylation.
There are some derivatives of amino acids that are Not found in proteins.
Glutamic acid
Histidine
Tryptophan
Metabolism
Example of a tetrapeptide
Condensation
Met-Enkephalin (Tyr-Gly-Gly-Phe-Met)
5aa
Biochemical metabolism
Digestion
Intestine
Absorption
Transcription occurs in the nucleus (from DNA to mRNA) Translation occurs in the cytoplasm (from mRNA to protein)
PROTEINS
MANUFACTURE
mRNA
Translation
Cytoplasm
DNA
Proteins
TRANSCRIPTION NUCLEUS
TRANSCRIPTION OF BLUEPRINT
3rd position
1st position
20 amino acids.
RNA.avi
PROTEIN RECEPTORS ON VIRUS CAN RECOGNIZE & BIND SPECIFICALLY TO CELLS H5N1 virus (blue) infecting cells
Neuraminidase
Virus coat
RNA genome
Cell membrane
HA
Viral membrane
Neuraminidase Required to release newly made viruses from the originally infected cell
Tetramer of Neuraminidase
Protein assembly
22 (heteromeric) - 141 amino acids - 146 amino acids 12 (homomeric) Each chain 468 amino acid