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ABIN Overview

Kymme Hoadley Client Support Coordinator


Email: kymme.hoadley@csiro.au Phone: (02) 6214 2967

Australian Biosecurity Online

Biosecurity Challenge
Activities

Research

Surveillance

Diagnostics

Emergency Response Not for Profits National Security Adopting new technology

Organisations

Government

Research

Industries

Sectors

Primary Industries

Environment

Human Health

Culture

Silos

Data sharing

Favorite IT systems

Strategic Initiatives

Connectivity

Collaboration

Security

Interoperability

Introduction to ABIN Video

http://vimeo.com/channels/abin

Cross agency meetings - up to 35 simultaneous participants

Real time cross-agency/field collaborative research & operations

Broadcast presentations to a total of 200 people, record and replay. Enables cross agency training and exercises

National network, distributed organisation, working group, committees

ABIN Service Delivery + Relationship with Third Parties

Virtual collaboration environments Single interface to sector specific + common tools

Managed by individual biosecurity communities


Dataanalysistools(e.g. mapping,modelling

Purpose-specific Infrastructure capability

e.g.Neptune,VetPath,WildHealth,FFBok,ST (LIMSinterface),PaDIL,ALA ARS

Provided by third party Biosecurity stakeholders

Dataanalysistools (e.g.mapping, modelling


ABIN infrastructure platform supporting common tools required across biosecurity sectors

Knowledge repositoryand Shareddatasets(e.g. referenceinfo)

Othertools (e.g.virtual diagnostics)

Collaboration T s ool (e.g.webconference andwhiteboarding)

Searchand Delivery

OnlineTraining

Provided by ABIN

ABINServerinfrastructureandoperations

Specialised generic infrastructure

DataStorage

ApplicationsHosting

Provided by third party infrastructure providers

ABINs web portal to biosecurity online

Online Biosecurity Communities

Since January 2011 there are 750 registered members, an additional 100 guest users, and 55 Community Spaces being used to meet needs across the biosecurity continuum

Registration and tutorials


Watch the registration video: http://www.abin.org.au/web/trainingvideos/simulation/regist er.htm Go to the http://www.abin.org.au homepage to register More training and tutorial videos are available on the http://www.abin.org.au/web/trainingvideos/ page

Spatially Enabling Datasets

Karin Stronkhorst Spatial Data Facilitator


Email: Karin.Stronkhorst@csiro.au Phone: (08) 8999 2175

Australian Biosecurity Online

GAP Analysis for Darwin and Cairns

GAP Analysis were conducted last year to determine the mapping needs of the stakeholders in the Top End to spatially enable their data and improve their GIS skills. A number of project proposals were identified in this analysis for different stakeholders.

GAP Analysis for NT


After prioritisation the following projects were selected where we assist in improving stakeholder staffs GIS skills in the process:
CRC National Plant Biosecurity Visualising rate and shape of Panama Disease NT DoR Spatially Enabled Animal Health Property Identification Code (PIC) NT DoR Spatially Enabled Plant Health Property Identification Code (PIC) NT DoR Spatially Enabled Interstate Certification Assurance System (ICAS) for Plant Health

1. GAP Analysis for NT Panama Disease


Objectives:
a) Produce time series maps/model displaying rate and shape of infection spread in Banana trees over 4 paddocks of one property using weekly field surveys showing banana plants infected with tropical race 4 panama disease Produce geoprocessing model for future application. Develop a standard field collection template/schema for future surveys using PDA devices or hardcopy methods.

b) c)

1. GAP Analysis for NT Panama Disease


Process Steps: Create a fishnet point grid Calculate fields: unique row id, column id and concatenate these into plant id Format data-collection spreadsheet to end up with plant id, infected and beginDate and endDate fields. Join the spreadsheet to the fishnet point grid & export to feature class Create the time series visualisation in ArcGIS

1. GAP Analysis for NT Panama Disease


ArcGIS Time Slider snapshot exhibiting unpredictable spread:

1. GAP Analysis for NT Panama Disease


Or when exported to an .avi movie something like this:

2. GAP Analysis for NT Animal Health PIC


Objectives:
a) b) c) d) e) f) Migrate Access Database to Oracle Spatial in NTLIS infrastructure Automate PIC numbering Create a spatial PIC layer via one-to-many join with DCDB Enable editing of polygons & attributes via browser Enable reporting on attributes via browser Develop updating process, tools and administrator training for maintenance of PIC layer.

3. GAP Analysis for NT Plant Health PIC


Objectives:
a) b) Same process as the Animal Health PIC AH PIC spatial dataset framework can be cloned

4. GAP Analysis for NT ICAS


Objectives:
a) Create a spatial layer of business address points with each point linked to the ICA records of an individual business in an MS Access database. b) Develop updating process, tools and administrator training for maintenance of ICA map layer. c) Make the points visible in a GIS client such as the ABIN Mapping Tool (AMT).

4. GAP Analysis for NT ICAS


Process Steps: Create points for existing businesses in database:
Extract Business addresses and concatenate a unique id from the business + facility identifiers Geocode in GPS Visualizer Add the coordinates to the facility table

Add X and Y fields to the entry form Create GIS query in MS Access Export GIS query to text or csv XY Event layer in ArcGIS, QGIS or the ABIN Mapping tool

4. GAP Analysis for NT ICAS in ABIN Mapping Tool

ABIN Spatial Software

Umair Cheema Spatial Software Developer


Email: umair.cheema@csiro.au Phone: (03) 96627325

Australian Biosecurity Online

Spatial Software in ABIN


All major ABIN software centric projects have Mapping components Using commercial as well as Open source GIS software
ESRI ArcGIS Oracle Spatial Geoserver Open Layers GeoExt QGIS GRASS

Development of ABIN Mapping Tool (AMT)


ABIN Mapping Tool is a secure online web mapping visualization and analysis software for Biosecurity community Currently under development Expected release to Biosecurity and Mapping Community Spaces in ABIN by April 20,2012

ABIN Mapping Tool (AMT)

AMT Features
Upload and visualize spatial data in Comma Separated Values (CSV), Tab Separated Values (TSV), Google KML and GPX format. Overlay different layers over a basemap Find all the available layers in the ABIN Geoserver Add a layer available in the ABIN Geoserver on the map Query Remote Spatial Database Server using Web Mapping Service (WMS) Pan, Zoom In and Zoom out of the map Zoom to the full extent of the map Display/Hide Map Scale Display/Hide Map Legend Display/Hide Individual Layers Find distances and Areas Change the opacity of a layer displayed on the map (Useful in Overlaying)

AMT Features (Contd...)


Display attributes of a vector dataset Display Latitude and Longitude of the location under the mouse cursor Select individual features of the layer Select a group of features within a bounding box Save the selected features as a separate layer Query vector data based on its attributes Save the result of the Attribute query as a separate layer Basis Statistical Analysis Export any layer as a downloadable KML dataset Add text annotation on the map Add markers (default as well as customized) anywhere on the map Save the map as an image Print the map

Screenshots

Screenshots

Screenshots

What can we do for you?

Questions
Visit us at
www.abin.org.au

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