Professional Documents
Culture Documents
Burden of URI
Significant morbidity and direct health care costs Direct costs of $ 17 billion annually Occasionally leads to fatal illness Excessive use of antibiotics a major issue
Parainfluenza was the first respiratory virus isolated (1955) Seasonal variation
Rhinovirus early fall Coronavirus- winter
Transmission of rhinoviruses
Direct contact is the most efficient means of transmission: 40% to 90% recovery from hands. Infectious droplet nuclei Brief exposure (e.g., handshake) transmits in less than 10% of instances Kissing does not seem to be a common mode of transmission.
Clinical characteristics
Incubation period 12-72 hours Nasal obstruction, drainage, sneezing, scratchy throat Median duration 1 week but 25% can last 2 weeks Pharyngeal erythema is commoner with adenovirus than with rhino or coronavirus
Paranasal sinuses
Sinusitis
Community acquired bacterial sinusitis
S.pneumoniae H. influenzae S. pyogenes
Nosocomial sinusitis
Seen in critically ill, mechanically ventilated
S. aureus Pseudomonas aeruginosa Serratia marcescens
fungal
Clinical features
Clinical features
Sneezing Nasal discharge Facial pressure Fever Purulent drainage Headache
Chronic sinusitis
The previous patient had an invasive aspergillus sinusitis as a result of chronic high dose steroid therapy, resulting in occlusion of carotid artery and invasion into the brain. She died in a month. Bacterial: Cultures show a variety of opportunistic pathogens including anaerobes but problem is mainly anatomic, not microbiologic Fungal: suspect especially when a single sinus is involved;
Acute pharyngitis
Inflammatory syndrome of the pharynx
Most cases are viral Most important bacterial cause is Streptococcus pyogenes (15-20%)
Presents with sore or scratchy throat In severe bacterial cases there may be odynophagia, fever, headache
Pharyngoconjuntival fever
Adenoviral pharyngitis Pharyngeal erythema and exudate may mimic streptococcal pharyngitis Conjunctivitis (follicular) present in 1/3 to 1/2 of cases; commonly unilateral but bilateral in 1/4 of cases
Diphtheria
Classic diphtheria (Corynebacterium diphtheriae): slow onset, then marked toxicity Arcanobacterium hemolyticum (formerly Cornyebacterium hemolyticum): exudative pharyngitis in adolescents and young adults with diffuse, sometimes pruritic maculopapular rash on trunk and extremities
Diphtheria fibrous
Treatment
Symptomatic Penicillin for Strep throat Macrolides for pen allergic patients Add an anti-anaerobic agent for Vincents and Ludwigs angina
Acute epiglottitis
A life-threatening cellulites of the epiglottis and adjacent structures Onset usually sudden (as opposed to gradual onset of croup); drooling, dysphagia, sore throat H. influenzae the usual pathogen both in children (the usual patients) and adults
Disease
Possible organisms
Preferred specimen
Disease
Possible organisms
Preferred specimen
Respiratory tract
Bronchi
One primary bronchus supplies each lung. lined with pseudostratified, ciliated epithelium and, on entering the lungs, divide to form the secondary lobar bronchi, one for each lobe of the lungs. Each secondary bronchus divides to produce tertiary bronchi, which in turn produce the bronchioles
Bronchial tree
This successive branching produces a bronchial tree of ever decreasing diameter which is characterised by a gradual loss of cartilage, increase in smooth muscle within the wall and change from columnar to cuboidal epithelium.
16 divisions in neonates 23 divisions in adults
Lungs
Each lung is divided by fissures into lobes: 2 in the left (superior and inferior), 3 in the right (superior, middle and inferior). The lobes are further subdivided into lobules. The lungs are housed in a pleural membrane. Within the lobules, the bronchial tree is now at the level of the bronchioles and subsequently the alveoli. It is estimated that the adult human lung contains 300 million alveoli, which collectively offer a total surface area of 70m2 for gaseous exchange. The lungs therefore, are primarily composed of alveoli, the capillaries of the pulmonary circulation and connective tissue. Adequately perfused lungs may consist of 40% by weight of blood in the circulation.
Bronchitis
Inflammation of the bronchial tubes Tissues become irritated More mucous then usual produced Results in cough
Acute bronchitis
Only lasts for a few weeks Generally viral in origin
Rhinovirus, parainfluenzae, RSV and Influenza
COPD
Acute exacerbations generally caused by viruses (rhinoviruses, parainfluenza) Secondary bacterial invasion is extremely common (H.influenzae, Moraxella)
Pneumonia
Inflammation of the alveoli of the parenchyma of the lung with consolidation and exudation Cough Pleuritic pain Production of purulent sputum Fever
Pneumonia
Risk factors COPD Diabetes Cardiac / Renal failure Immunosuppression Reduced levels consciousness Anything that inhibits the gag / cough reflex
Pasturella N. meningitidis
Atypical pneumonia
Mycoplasma pneumoniae (Eaton agent) Obligate human pathogen Epidemics occur at 4-6 year intervals Spread requires close contact Common in children <5 years mild illness Most common in 5-20 year age group walking pneumonia
Atypical pneumonias
Chlamydia pneumoniae Chlamydia psittaci Legionairres disease Q fever (Coxiella burnetti)
Hantavirus (ARDS)
Overview
A. Basic Virology B. Flu, Seasonal flu, Avian flu, Swine flu and Pandemic Flu C. Transmission D. Specimen Collection and Transport E. Infection Control
A. Influenza viruses
Three main types
Influenza A Influenza B Influenza C
H type is antigenic and antibodies formed against it, Only homo typic protection
17 H types and 9 M types (These are used to name the different viruses)
Influenza A subtypes
Different subtypes causes infections in different species Generally Avian Viruses cause infections in birds Human Strains cause infections in humans Inter species spread is minimal species barrier But occur @ Human animal interface
Sub types
Source Avian Influenza viruses Any type may be present but H5, H7 and H9 are common Influenza A ( H5) Influenza A (H7) Influenza A (H9) Swine origin H1, H2 and H3 Subtypes H5N1, H5N2, H5N3, H5N4, H5N5, H5N6, H5N7, H5N8, and H5N9 H7N1, H7N2, H7N3, H7N4, H7N5, H7N6, H7N7, H7N8, and H7N9. H9N1, H9N2, H9N3, H9N4, H9N5, H9N6, H9N7, H9N8, and H9N9 H1N1, H1N2, H2N1, H3N1, H3N2, and H2N3
Prominent Human
52 key genetic differences exist between human and avian sub types Position 627 in RNA Same position codes for polymerase all human GLU subtypes- codes for LYS Until discovery of H5 N1 2-3 sialic acid 2-6 sialic acid receptors receptors Swine types binds to the both 2-3 and 2-6 sialic acid receptors
Pig-Man Interface
B. 1. Flu
Common term used to describe clinical manifestation of infection caused by influenza viruses Influenza A, B, and C Clinical feature
Fever* or feeling feverish/chills Cough Sore throat Runny or stuffy nose Muscle or body aches Headaches Fatigue (tiredness) Some people may have vomiting and diarrhea, though this is more common in children than adults.
Flu, which shows epidemic spread in certain Seasonal flu Usually due to human adapted sub types
Seasonal flu in northern hemisphere -October and as late as May Seasonal flu in southern hemisphere-
B 2. Seasonal Flu
In each flu season- 15% to 20% of population get flu during a season with average of 36,000 deaths (USA) Risk groups
Elderly, patients with chronic Respiratory infections, Diabetics, residents in Long term Care
These human adapted strains may change the antigenic structure in due to changes occur in genome antigenic drift
Seasonal Flu.
Every year, the public health officials of northern hemisphere look out for Virological Surveillance for Infkuenza A and B and Novel Viruses Outpatient Illness Surveillance (ILI) and SARI Mortality Surveillance - from influenza A like illnesses Influenza-Associated Pediatric Mortality Surveillance System Hospitalization Surveillance from SARI and ILI Summary of the Geographic Spread of Influenza In parallel, a surveillance is going on in southern hemisphere as well
We too, carry out them in smaller scale ILI, SARI, and Sentinel site surveillance too.
If found to be positive in a herd- CULLING is advices in order to prevent further spread So far not reported in SL A rare possibility of transferring to humans at Human animal interface High Mortality
B 4. Swine Influenza
Also known as
pig influenza, swine flu, hog flu and pig flu
Infection by one of several types of swine influenza viruses SIV or S-OIV (Viruses endemic to pigs) H1N1, H1N2, H2N1, H3N1, H3N2, and H2N3.
Swine Flu
B 5. Pandemic Flu
When usually influenza illnesses spread across continents with huge mortality among humans Usually due to appearance of novel virus strain which is transmissible from person to person As the people lack immunity to Large numbers succumbed Cytokine Storm Due to major change of genome due to re-assortment
C.Transmission
Infected asymptomatic and Infected symptomatic
When Sneeze or talk
Direct spread Up to 6 feet through droplets Indirect spread- via surfaces and fomites through contact
Flu is contagious
Healthy adults with disease -infectious one day before symptoms to 5 to 7 d after become sick Children - infectious >>7 days
Some may get asymptomatic disease- but still spread the disease
Sample collection
Personal Protective Equipment N95 mask, gloves, gown Timing : Early as possible (<7 days), before starting antivirals Sample into sterile, externally screw capped container with VTM Stored and transported at +4oC (not more than 72 hours)
E. Infection Control
Prevent Infection transmission