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B¶ngc¸cph¬ngph¸pthêngdïng®
ÓtinhchÕprotein
• C¸cbíctinhchÕ cãxuthÕ b¶o® ¶mcho
Property Methods proteinë tr¹ngth¸i tùnhiÖ n. M Æcdï thÕ
m étsèproteincã thÓ t¸i tùnhiÕ n(re-
solubility Precipitationwith natured), hÇuhÕtlµkh«ngthÓ !
am m oniumsulfate
(saltingout)*
• §Ó tinhchÕproteintronghçnhîp, cãrÊ t
nhiÒuph¬ngph¸pkh¸cnhauthÝ chhîp
Size/ shape Size-exclusion chotõnglo¹i protein. Chóngkh¸cnhauvÒ
chrom otography
– TÝ
nhbÕ
nnhiÖ
t*
Isoelectricpoint Ionexhange
(charge) chromatography
bindingtosmall Affinity
m olecules chrom atography
*KÕt tñaammoniumsulfatelµrÊ
t rÎ, dÔkiÕ
mvµphï hîpchoc¸cmÉ
ulín. Nãth ênglµb íc
®Ç
utiªntrongs¬® åtinhchÕ.
*ChohÇ uhÕtc¸cqu¸ tr×nhtinhchÕ
protein, tÊtc¶c¸cb ícthùchiÖnë
~5°C® Ó lµmgi¶nsùbÊ tho¹t.
Protein Purification Tutorial Intro side bar
C¸ c b í c ThÓtÝch ph©n Protein tæng Ho¹ t tÝnh Ho¹ t tÝnh riª ng Purification
Yield
®o¹ n (ml) (mg) (unit) Unit/mg factor
Add row with ammonium sulfate data. Include two colums at end called
Purification factor and Yield.
Note: The type and order of steps are customized for each protein to be
purified. An effective purification step results in a high yield (minimal loss
of enzyme activity) and large purification factor (large increase in specific
activity).
Intro – flow chart. Purification is a multi step
Protein Purification Tutorial procedure
MÉu
Kü thuËt t¸ ch
LËp l¹ i ví i c¸ c kü
Fractionation
thuËt kh¸ c ®Õn tËn
khi tinh khiÕt
No
Assay total protein
Assay enzyme activity
yes
• First steps
– 1. Nguån. Mét nguån tèt lµ ph¶i rÎ
vµ s½n cã. NhiÒu protein cã nhiÒu
trong c¸ c m« ®Æc biÖt, vÝdô nh
hemoglobin trong m¸ u. V×lý do
nµy mµ nhiÒu m« lµ nh÷ng nguån
tuyÖt vêi cho protein cña chóng ta.
– 2. Thö nghiÖm: hÇu hÕt c¸ c thö
nghiÖm lµ c¸ c ph¶n øng ho¸
hâcóc t¸ c nhê c¸ c ho¹ t tÝnh ®Æc
tr ng. C¸ c protein kh«ng cã ho¹ t
tÝnh th êng ® î c thö nghiÖm nhê
SDS polyacrylamide gel.
Protein Purification Tutorial Assay – develop an assay
N í c næi ví i
protein hoµ tan
Ph¸ vì tÕbµo,
m« hoÆc c¬ quan
NghiÒn,
®ång ho¸ ,
Siª u ©m,
¸ p lùc,
TÕbµo vi thÈm thÊu KÕt l¾ng cã c¸ c tÕbµo, organelles,
sinh vËt mµng vµ c¸ c protein mµng
hoÆc m«
Protein Purification Tutorial Segway to Chromotography
Sample
Separation
technique
No
Assay total protein
Assay enzyme activity
yes
• H×nh ¶nh hån hî p protein n»m DÞch chiÕt th« ® î c ®Ótrª n ®Ønh cña chÊt
ë trª n bÒmÆt nhåi r¾n (solid matrix). (trong tr êng
hî p nµy chóng ta sö dông hçn hî p 4
protein, hiÓn thÞb»ng c¸ c mµu kh¸ c
nhau.)
• Trong thùc tÕ, protein kh«ng cã mµu 1. Lµm thÕnµo chóng ta biÕt ® î c ph©n
v×vËy chóng ta sÏ cã 3 c©u hái: ®o¹ n cã protein?
???
Protein Purification Tutorial Question 1 – take A280 Screen 1.
Take A280
otein Purification Tutorial Question 1 – take A280 Screen 2 .
Plot values
Protein Purification Tutorial Question 1 – take A280 Screen 3 .
Fraction
#
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 • L u ý c¸ c peak trª n ®å thÞ. Nã hiÓn
0 0 0 2 5 2 0 0 0 2 5 8 5 2 0 0 2 5 2 0
thÞë ph©n ®o¹ n nµo cã protein.
A280
Peaks
A280
Fraction #
Protein Purification Tutorial Question 1 – take A280 Screen 4 .
A280
Fraction #
Protein Purification Tutorial Question 2 – take A280 Screen 1 .
Fraction
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
# Fraction
#
0 0 0 2 5 2 0 0 0 2 5 8 5 2 0 0 2 5 2 0
A280
Enz. Assay.
A280
Protein Purification Tutorial Question 2 – take A280 Screen 2.
Fraction #
Protein Purification Tutorial Question 2 – take A280 Screen 3.
Fraction
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 • L u ý c¸ c kÕt qu¶ cña thö enzyme.
#
Ho¹ t tÝnh cao nhÊt t ¬ng ® ¬ng ví i
0 0 0 2 5 2 0 0 0 2 5 8 5 2 0 0 2 5 2 0
A280 mét trong c¸ c peak.
EnzAssay
Results
Fraction #
Protein Purification Tutorial POOL fractions – screen 1
Fraction
#
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Fraction #
Protein Purification Tutorial POOL fractions – screen 2
Fraction #
Protein Purification Tutorial Assess purity – screen 1
Results:
1. Gel shows more than one band.
Since the sample is not pure, you must pass pooled sample through another separation technique
Another separation
Protein Purification Tutorial Assess purity – screen 2
Purification Table
B í c thùc ThÓtÝch ph©n Protein tæng H¹ t tÝnh tæng Ho¹ t tÝnh riª ng
hiÖn ®o¹ n (ml) (mg) (units) Units/mg
Crude cellular 1400 10000 100000 10
extract
Separation 90 400 80000 200
method 1
Separation 8 4 60000 15000
method 2
Results:
1. Gel shows one band
2. Specific activity is 15000. Looks good
Ammonium sulfate precipitation is cheap, easy, and accommodates large sample sizes.
It is commonly one of the first steps in a purification scheme.
Protein Purification Tutorial Gel filtration 1 -basis
60 Kd 20 Kd 20 Kd 5 Kd
Run column
Fraction #
Protein Purification Tutorial Gel Filtration 5.
Sephadex./
Protein Purification Tutorial ION –EXCHANGE 1
Run column
pos
pos
pos
pos
Protein Purification Tutorial Ion Exchange 3 –column run
pos
These beads are porous, too, so you can show the
proteins moving right through the beads in the
animation, ifyou like.
pos
pos
pos
Protein Purification Tutorial Ion Exchange 4- zoom out
20 1
A280
Fraction #
Protein Purification Tutorial Ion Exchange 5 - zoom out
A280
Fraction #
Protein Purification Tutorial Ion Exchange 6 – after salt
A280
Fraction #
Protein Purification Tutorial Ion Exchange 7 – after salt
+ T¨ ng nång ®é muèi.
--- Protein nµo sÏ ®i ra tr í c?
---
Run column
A280
Fraction #
Protein Purification Tutorial Ion Exchange 8 – after salt
1.5
A280 Salt
concentration
0.0
Fraction #
Protein Purification Tutorial Ion Exchange 9 – Increase salt conc. Again.
Add salt
T¨ ng nång ®é muèi
1.5
A280 Salt
concentration
0.0
Fraction #
Protein Purification Tutorial Ion Exchange 10 – rum column prompt.
Run column
1.5
A280 Salt
concentration
0.0
Fraction #
Protein Purification Tutorial Ion Exchange 11 – results.
Run column
1.5
A280 Salt
concentration
0.0
Fraction #
Protein Purification Tutorial Ion Exchange 12 – results.
1.5
A280 Salt
concentration
0.0
Fraction #
Protein Purification Tutorial Affinity Chromotography.
Place final table here - we can include the thing plot with protein conc going
down, enzyme amount remaining constant, and specific activity on the rise.